Booting from SDCARD

Hi there,
I'm at a total loss. I have a Le Potato with sdcard and EMMC card. On the sdcard I have CoreElec installed and on the EMMC there is a default Android version.
Now when I boot with only the sdcard in the sbc CoreElec boots just fine. However when the emmc is also connected android is booted, even when holding the uboot during startup.
My ideal situation is CoreElec on the EMMC module however I downloaded the USB write tool which fails after opening the file.
Any suggestions?
Cheers, Ronald
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